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C
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D
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E
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F
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H
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I
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K
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Y
A
access_token (narupa.protocol.state.state_service_pb2.UpdateLocksRequest attribute)
(narupa.protocol.state.state_service_pb2.UpdateStateRequest attribute)
active_interactions (narupa.imd.imd_state.ImdStateWrapper attribute)
add_ase_box_vectors_to_frame_data() (in module narupa.ase.converter)
add_ase_positions_to_frame_data() (in module narupa.ase.converter)
add_ase_state_to_frame_data() (in module narupa.ase.converter)
add_ase_topology_to_frame_data() (in module narupa.ase.converter)
add_callback() (narupa.utilities.event.Event method)
add_CommandServicer_to_server() (in module narupa.protocol.command.command_service_pb2_grpc)
add_frame_data_positions_to_ase() (in module narupa.ase.converter)
add_frame_data_topology_to_ase() (in module narupa.ase.converter)
add_frame_positions_to_mda() (in module narupa.mdanalysis.converter)
add_frame_topology_to_mda() (in module narupa.mdanalysis.converter)
add_imd_force_to_system() (in module narupa.openmm.imd)
add_InstanceServiceServicer_to_server() (in module narupa.protocol.instance.instance_service_pb2_grpc)
add_mda_positions_to_frame_data() (in module narupa.mdanalysis.converter)
add_mda_topology_to_frame_data() (in module narupa.mdanalysis.converter)
add_multiuser_commands() (in module narupa.app.multiuser)
add_openmm_state_to_frame_data() (in module narupa.openmm.converter)
add_openmm_topology_to_frame_data() (in module narupa.openmm.converter)
add_particles() (narupa.app.selection.RenderingSelection method)
add_RepresentationServiceServicer_to_server() (in module narupa.protocol.instance.representation_service_pb2_grpc)
add_service() (narupa.app.app_server.NarupaApplicationServer method)
(narupa.core.grpc_server.GrpcServer method)
(narupa.essd.servicehub.ServiceHub method)
add_StateServicer_to_server() (in module narupa.protocol.state.state_service_pb2_grpc)
add_TrajectoryServiceServicer_to_server() (in module narupa.protocol.trajectory.trajectory_service_pb2_grpc)
Address (class in narupa.protocol.address_pb2)
address (narupa.app.app_server.NarupaApplicationServer attribute)
(narupa.app.runner.NarupaRunner attribute)
(narupa.ase.imd.NarupaASEDynamics attribute)
(narupa.core.grpc_server.GrpcServer attribute)
(narupa.essd.servicehub.ServiceHub attribute)
(narupa.protocol.address_pb2.Address attribute)
(narupa.protocol.instance.connect_to_trajectory_pb2.ConnectToTrajectoryRequest attribute)
address_and_port (narupa.core.grpc_server.GrpcServer attribute)
adjust_forces() (narupa.ase.wall_constraint.VelocityWallConstraint method)
adjust_momenta() (narupa.ase.wall_constraint.VelocityWallConstraint method)
adjust_positions() (narupa.ase.wall_constraint.VelocityWallConstraint method)
all_frames (narupa.app.client.NarupaImdClient attribute)
app (narupa.openmm.runner.OpenMMRunner attribute)
app_server (narupa.app.runner.NarupaRunner attribute)
(narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
(narupa.openmm.runner.OpenMMRunner attribute)
apply_single_interaction_force() (in module narupa.imd.imd_force)
are_frames_subscribed (narupa.app.client.NarupaImdClient attribute)
arguments (narupa.command.command_info.CommandInfo attribute)
(narupa.protocol.command.command_service_pb2.CommandMessage attribute)
array_keys (narupa.trajectory.frame_data.FrameData attribute)
arrays (narupa.protocol.trajectory.frame_pb2.FrameData attribute)
ArraysView (class in narupa.trajectory.frame_data)
ase_to_frame_data() (in module narupa.ase.converter)
ASEOpenMMRunner (class in narupa.ase.openmm.runner)
atoms (narupa.ase.imd.NarupaASEDynamics attribute)
attempt_update_locks() (narupa.core.narupa_client.NarupaClient method)
attempt_update_multiplayer_locks() (narupa.app.client.NarupaImdClient method)
attempt_update_multiplayer_state() (narupa.app.client.NarupaImdClient method)
attempt_update_state() (narupa.core.narupa_client.NarupaClient method)
autoconnect() (narupa.app.client.NarupaImdClient class method)
available_commands (narupa.core.narupa_client.NarupaClient attribute)
B
base_trajectory_path (narupa.ase.openmm.runner.TrajectoryLoggerInfo attribute)
basic_imd() (narupa.ase.imd.NarupaASEDynamics class method)
basic_server() (narupa.app.app_server.NarupaApplicationServer class method)
bond_orders (narupa.trajectory.frame_data.FrameData attribute)
bond_pairs (narupa.trajectory.frame_data.FrameData attribute)
box_vectors (narupa.trajectory.frame_data.FrameData attribute)
C
calculate() (narupa.ase.imd_calculator.ImdCalculator method)
(narupa.ase.null_calculator.NullCalculator method)
(narupa.ase.openmm.calculator.OpenMMCalculator method)
calculate_gaussian_force() (in module narupa.imd.imd_force)
calculate_imd_force() (in module narupa.imd.imd_force)
calculate_spring_force() (in module narupa.imd.imd_force)
calculator (narupa.ase.imd_calculator.ImdCalculator attribute)
callback (narupa.command.command_service.CommandRegistration attribute)
cancel_run() (narupa.ase.imd.NarupaASEDynamics method)
(narupa.openmm.runner.OpenMMRunner method)
chain_count (narupa.trajectory.frame_data.FrameData attribute)
chain_names (narupa.trajectory.frame_data.FrameData attribute)
changed_keys (narupa.protocol.state.state_service_pb2.StateUpdate attribute)
clear_particles() (narupa.app.selection.RenderingSelection method)
clear_selections() (narupa.app.client.NarupaImdClient method)
close() (narupa.app.app_server.NarupaApplicationServer method)
(narupa.app.app_server.SupportsClose method)
(narupa.app.client.NarupaImdClient method)
(narupa.app.frame_app.NarupaFrameApplication method)
(narupa.app.runner.NarupaRunner method)
(narupa.ase.imd.NarupaASEDynamics method)
(narupa.ase.openmm.runner.ASEOpenMMRunner method)
(narupa.ase.openmm.runner.TrajectoryLoggerInfo method)
(narupa.ase.trajectory_logger.TrajectoryLogger method)
(narupa.core.grpc_client.GrpcClient method)
(narupa.core.grpc_server.GrpcServer method)
(narupa.core.narupa_client.NarupaClient method)
(narupa.core.narupa_server.NarupaServer method)
(narupa.essd.client.DiscoveryClient method)
(narupa.essd.server.DiscoveryServer method)
(narupa.imd.imd_client.ImdClient method)
(narupa.lammps.LammpsImd.LammpsImd method)
(narupa.openmm.runner.OpenMMRunner method)
(narupa.state.state_service.StateService method)
(narupa.trajectory.frame_publisher.FramePublisher method)
(narupa.trajectory.frame_server.FrameServer method)
CloseInstance() (narupa.protocol.instance.instance_service_pb2_grpc.InstanceService static method)
(narupa.protocol.instance.instance_service_pb2_grpc.InstanceServiceServicer method)
CloseInstanceRequest (class in narupa.protocol.instance.instance_service_pb2)
CloseInstanceResponse (class in narupa.protocol.instance.instance_service_pb2)
Command (class in narupa.protocol.command.command_service_pb2_grpc)
CommandInfo (class in narupa.command.command_info)
CommandMessage (class in narupa.protocol.command.command_service_pb2)
CommandRegistration (class in narupa.command.command_service)
CommandReply (class in narupa.protocol.command.command_service_pb2)
commands (narupa.command.command_service.CommandService attribute)
(narupa.core.narupa_server.NarupaServer attribute)
(narupa.protocol.command.command_service_pb2.GetCommandsReply attribute)
CommandService (class in narupa.command.command_service)
CommandServicer (class in narupa.protocol.command.command_service_pb2_grpc)
CommandStub (class in narupa.protocol.command.command_service_pb2_grpc)
configure_reusable_socket() (in module narupa.essd.server)
connect() (narupa.app.client.NarupaImdClient method)
connect_imd() (narupa.app.client.NarupaImdClient method)
connect_multiplayer() (narupa.app.client.NarupaImdClient method)
connect_to_single_server() (narupa.app.client.NarupaImdClient class method)
connect_to_single_server_multiple_ports() (narupa.app.client.NarupaImdClient class method)
connect_trajectory() (narupa.app.client.NarupaImdClient method)
ConnectToTrajectory() (narupa.protocol.instance.instance_service_pb2_grpc.InstanceService static method)
(narupa.protocol.instance.instance_service_pb2_grpc.InstanceServiceServicer method)
ConnectToTrajectoryRequest (class in narupa.protocol.instance.connect_to_trajectory_pb2)
ConnectToTrajectoryResponse (class in narupa.protocol.instance.connect_to_trajectory_pb2)
converter (narupa.mdanalysis.converter.FrameDataFieldConversion attribute)
copy() (narupa.trajectory.frame_data.FrameData method)
copy_content() (narupa.state.state_dictionary.StateDictionary method)
(narupa.utilities.change_buffers.DictionaryChangeMultiView method)
copy_state() (narupa.core.narupa_client.NarupaClient method)
(narupa.core.narupa_server.NarupaServer method)
(narupa.state.state_service.StateService method)
create_imd_force() (in module narupa.openmm.imd)
create_selection() (narupa.app.client.NarupaImdClient method)
create_view() (narupa.utilities.change_buffers.DictionaryChangeMultiView method)
current_frame (narupa.app.client.NarupaImdClient attribute)
D
data (narupa.protocol.trajectory.get_frame_pb2.GetFrameRequest attribute)
dataclass() (in module narupa.ase.openmm.runner)
deep_copy_serializable_dict() (in module narupa.utilities.protobuf_utilities)
DEFAULT_CONNECTION_PORT (narupa.core.grpc_client.GrpcClient attribute)
DEFAULT_SERVER_NAME (narupa.app.app_server.NarupaApplicationServer attribute)
(narupa.app.frame_app.NarupaFrameApplication attribute)
(narupa.app.imd_app.NarupaImdApplication attribute)
delete() (narupa.trajectory.frame_data.RecordView method)
(narupa.utilities.key_lockable_map.KeyLockableMap method)
describeNextReport() (narupa.openmm.imd.NarupaImdReporter method)
(narupa.openmm.narupareporter.NarupaReporter method)
DESCRIPTOR (narupa.protocol.address_pb2.Address attribute)
(narupa.protocol.array_pb2.FloatArray attribute)
(narupa.protocol.array_pb2.IndexArray attribute)
(narupa.protocol.array_pb2.StringArray attribute)
(narupa.protocol.array_pb2.ValueArray attribute)
(narupa.protocol.command.command_service_pb2.CommandMessage attribute)
(narupa.protocol.command.command_service_pb2.CommandReply attribute)
(narupa.protocol.command.command_service_pb2.GetCommandsReply attribute)
(narupa.protocol.command.command_service_pb2.GetCommandsRequest attribute)
(narupa.protocol.instance.connect_to_trajectory_pb2.ConnectToTrajectoryRequest attribute)
(narupa.protocol.instance.connect_to_trajectory_pb2.ConnectToTrajectoryResponse attribute)
(narupa.protocol.instance.instance_service_pb2.CloseInstanceRequest attribute)
(narupa.protocol.instance.instance_service_pb2.CloseInstanceResponse attribute)
(narupa.protocol.instance.instance_service_pb2.GetInstanceInfoRequest attribute)
(narupa.protocol.instance.instance_service_pb2.GetInstanceInfoResponse attribute)
(narupa.protocol.instance.instance_service_pb2.LoadTrajectoryRequest attribute)
(narupa.protocol.instance.instance_service_pb2.LoadTrajectoryResponse attribute)
(narupa.protocol.instance.representation_service_pb2.SetRepresentationRequest attribute)
(narupa.protocol.instance.representation_service_pb2.SetRepresentationResponse attribute)
(narupa.protocol.state.state_service_pb2.StateUpdate attribute)
(narupa.protocol.state.state_service_pb2.SubscribeStateUpdatesRequest attribute)
(narupa.protocol.state.state_service_pb2.UpdateLocksRequest attribute)
(narupa.protocol.state.state_service_pb2.UpdateLocksResponse attribute)
(narupa.protocol.state.state_service_pb2.UpdateStateRequest attribute)
(narupa.protocol.state.state_service_pb2.UpdateStateResponse attribute)
(narupa.protocol.trajectory.frame_pb2.FrameData attribute)
(narupa.protocol.trajectory.frame_pb2.FrameData.ArraysEntry attribute)
(narupa.protocol.trajectory.frame_pb2.FrameData.ValuesEntry attribute)
(narupa.protocol.trajectory.get_frame_pb2.GetFrameRequest attribute)
(narupa.protocol.trajectory.get_frame_pb2.GetFrameResponse attribute)
deserialize_simulation() (in module narupa.openmm.serializer)
dict_to_interaction() (in module narupa.imd.imd_state)
dict_to_struct() (in module narupa.utilities.protobuf_utilities)
dictionary_change_to_state_update() (in module narupa.state.state_service)
DictionaryChange (class in narupa.utilities.change_buffers)
DictionaryChangeBuffer (class in narupa.utilities.change_buffers)
DictionaryChangeMultiView (class in narupa.utilities.change_buffers)
DictOfQueues (class in narupa.utilities.request_queues)
discovery (narupa.app.app_server.NarupaApplicationServer attribute)
discovery_port (narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
DiscoveryClient (class in narupa.essd.client)
DiscoveryServer (class in narupa.essd.server)
dynamics (narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
dynamics_interval (narupa.ase.imd.NarupaASEDynamics attribute)
(narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
(narupa.openmm.runner.OpenMMRunner attribute)
E
Event (class in narupa.utilities.event)
extract_atom() (narupa.lammps.mock.MockLammps method)
extract_global() (narupa.lammps.mock.MockLammps method)
F
fields (narupa.protocol.instance.instance_service_pb2.GetInstanceInfoRequest attribute)
find_unit_type() (narupa.lammps.LammpsImd.LammpsImd method)
first_frame (narupa.app.client.NarupaImdClient attribute)
float_values (narupa.protocol.array_pb2.ValueArray attribute)
FloatArray (class in narupa.protocol.array_pb2)
flush_changed_blocking() (narupa.utilities.change_buffers.DictionaryChangeBuffer method)
flush_changes() (narupa.app.selection.RenderingSelection method)
force_interval (narupa.openmm.runner.OpenMMRunner attribute)
forces (narupa.lammps.conversions.LammpsUnitConverter attribute)
frame (narupa.protocol.trajectory.get_frame_pb2.GetFrameResponse attribute)
frame_count (narupa.trajectory.frame_server.FrameServer attribute)
frame_data_to_ase() (in module narupa.ase.converter)
frame_data_to_mdanalysis() (in module narupa.mdanalysis.converter)
frame_index (narupa.protocol.trajectory.get_frame_pb2.GetFrameResponse attribute)
frame_interval (narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
(narupa.openmm.runner.OpenMMRunner attribute)
(narupa.protocol.trajectory.get_frame_pb2.GetFrameRequest attribute)
frame_publisher (narupa.app.frame_app.NarupaFrameApplication attribute)
FrameClient (class in narupa.trajectory.frame_client)
FrameData (class in narupa.protocol.trajectory.frame_pb2)
(class in narupa.trajectory.frame_data)
FrameData.ArraysEntry (class in narupa.protocol.trajectory.frame_pb2)
FrameData.ValuesEntry (class in narupa.protocol.trajectory.frame_pb2)
FrameDataField (class in narupa.mdanalysis.converter)
FrameDataFieldConversion (class in narupa.mdanalysis.converter)
FramePublisher (class in narupa.trajectory.frame_publisher)
frames (narupa.app.client.NarupaImdClient attribute)
FrameServer (class in narupa.trajectory.frame_server)
freeze() (narupa.state.state_dictionary.StateDictionary method)
(narupa.utilities.change_buffers.DictionaryChangeBuffer method)
(narupa.utilities.change_buffers.DictionaryChangeMultiView method)
from_dictionary() (narupa.app.selection.RenderingSelection class method)
from_json() (narupa.essd.servicehub.ServiceHub class method)
from_proto() (narupa.command.command_info.CommandInfo class method)
from_xml() (narupa.ase.openmm.calculator.OpenMMCalculator class method)
(narupa.ase.openmm.runner.ASEOpenMMRunner class method)
from_xml_input() (narupa.openmm.runner.OpenMMRunner class method)
G
gather_atoms() (narupa.lammps.mock.MockLammps method)
generate_atoms() (narupa.ase.openmm.calculator.OpenMMCalculator method)
generate_bonds_from_ase() (in module narupa.ase.converter)
get() (narupa.trajectory.frame_data.RecordView method)
(narupa.utilities.key_lockable_map.KeyLockableMap method)
(narupa.utilities.request_queues.SingleItemQueue method)
get_all() (narupa.utilities.key_lockable_map.KeyLockableMap method)
get_broadcast_addresses() (in module narupa.essd.utils)
get_broadcast_addresses_for_service() (narupa.essd.server.DiscoveryServer method)
get_broadcastable_ip() (in module narupa.essd.utils)
get_center_of_mass_subset() (in module narupa.imd.imd_force)
get_change_buffer() (narupa.state.state_dictionary.StateDictionary method)
(narupa.state.state_service.StateService method)
get_imd_forces_from_system() (in module narupa.openmm.imd)
get_ipv4_addresses() (in module narupa.essd.utils)
get_masses() (narupa.openmm.imd.NarupaImdReporter static method)
get_natoms() (narupa.lammps.mock.MockLammps method)
get_nested_or_default() (in module narupa.app.selection)
get_periodic_box_lengths() (in module narupa.ase.imd_calculator)
get_radius_of_element() (in module narupa.ase.converter)
get_requested_port_or_default() (in module narupa.core.grpc_server)
get_selection() (narupa.app.client.NarupaImdClient method)
get_service_address() (narupa.essd.servicehub.ServiceHub method)
get_shared_value() (narupa.app.client.NarupaImdClient method)
GetCommands() (narupa.command.command_service.CommandService method)
(narupa.protocol.command.command_service_pb2_grpc.Command static method)
(narupa.protocol.command.command_service_pb2_grpc.CommandServicer method)
GetCommandsReply (class in narupa.protocol.command.command_service_pb2)
GetCommandsRequest (class in narupa.protocol.command.command_service_pb2)
GetFrame() (narupa.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryService static method)
(narupa.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryServiceServicer method)
GetFrameRequest (class in narupa.protocol.trajectory.get_frame_pb2)
GetFrameResponse (class in narupa.protocol.trajectory.get_frame_pb2)
GetFrameResponseAggregatingQueue (class in narupa.utilities.request_queues)
GetFrames() (narupa.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryService static method)
(narupa.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryServiceServicer method)
GetInstanceInfo() (narupa.protocol.instance.instance_service_pb2_grpc.InstanceService static method)
(narupa.protocol.instance.instance_service_pb2_grpc.InstanceServiceServicer method)
GetInstanceInfoRequest (class in narupa.protocol.instance.instance_service_pb2)
GetInstanceInfoResponse (class in narupa.protocol.instance.instance_service_pb2)
GrpcClient (class in narupa.core.grpc_client)
GrpcServer (class in narupa.core.grpc_server)
H
handle_user_arguments() (in module narupa.ase.openmm.cli)
(in module narupa.essd.list_cli)
(in module narupa.openmm.cli)
hide (narupa.app.selection.RenderingSelection attribute)
I
id (narupa.essd.servicehub.ServiceHub attribute)
imd (narupa.app.imd_app.NarupaImdApplication attribute)
imd_state (narupa.imd.imd_server.ImdServer attribute)
ImdCalculator (class in narupa.ase.imd_calculator)
ImdClient (class in narupa.imd.imd_client)
ImdParams (class in narupa.ase.openmm.runner)
ImdServer (class in narupa.imd.imd_server)
ImdStateWrapper (class in narupa.imd.imd_state)
implemented_properties (narupa.ase.openmm.calculator.OpenMMCalculator attribute)
index_values (narupa.protocol.array_pb2.ValueArray attribute)
IndexArray (class in narupa.protocol.array_pb2)
info (narupa.command.command_service.CommandRegistration attribute)
(narupa.protocol.instance.instance_service_pb2.GetInstanceInfoResponse attribute)
initialise() (in module narupa.ase.openmm.cli)
insecure_channel() (narupa.core.grpc_client.GrpcClient class method)
insert_interaction() (narupa.imd.imd_state.ImdStateWrapper method)
instance_id (narupa.protocol.instance.connect_to_trajectory_pb2.ConnectToTrajectoryRequest attribute)
(narupa.protocol.instance.instance_service_pb2.CloseInstanceRequest attribute)
(narupa.protocol.instance.instance_service_pb2.CloseInstanceResponse attribute)
(narupa.protocol.instance.instance_service_pb2.GetInstanceInfoRequest attribute)
(narupa.protocol.instance.instance_service_pb2.GetInstanceInfoResponse attribute)
(narupa.protocol.instance.instance_service_pb2.LoadTrajectoryRequest attribute)
(narupa.protocol.instance.instance_service_pb2.LoadTrajectoryResponse attribute)
(narupa.protocol.instance.representation_service_pb2.SetRepresentationRequest attribute)
(narupa.protocol.instance.representation_service_pb2.SetRepresentationResponse attribute)
InstanceService (class in narupa.protocol.instance.instance_service_pb2_grpc)
InstanceServiceServicer (class in narupa.protocol.instance.instance_service_pb2_grpc)
InstanceServiceStub (class in narupa.protocol.instance.instance_service_pb2_grpc)
interaction_method (narupa.app.selection.RenderingSelection attribute)
interaction_to_dict() (in module narupa.imd.imd_state)
interaction_type (narupa.imd.particle_interaction.ParticleInteraction attribute)
interactions (narupa.app.client.NarupaImdClient attribute)
(narupa.ase.imd_calculator.ImdCalculator attribute)
(narupa.imd.imd_client.ImdClient attribute)
(narupa.lammps.LammpsImd.LammpsImd attribute)
internal_calculator (narupa.ase.imd.NarupaASEDynamics attribute)
interval (narupa.utilities.timing.VariableIntervalGenerator attribute)
invoke() (narupa.utilities.event.Event method)
is_broadcasting (narupa.essd.server.DiscoveryServer attribute)
is_channel_owner (narupa.core.grpc_client.GrpcClient attribute)
is_in_network() (in module narupa.essd.utils)
is_running (narupa.app.runner.NarupaRunner attribute)
(narupa.ase.imd.NarupaASEDynamics attribute)
(narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
(narupa.openmm.runner.OpenMMRunner attribute)
iter_queues() (narupa.utilities.request_queues.DictOfQueues method)
iter_queues_items() (narupa.utilities.request_queues.DictOfQueues method)
K
key (narupa.mdanalysis.converter.FrameDataField attribute)
(narupa.mdanalysis.converter.FrameDataFieldConversion attribute)
(narupa.protocol.trajectory.frame_pb2.FrameData.ArraysEntry attribute)
(narupa.protocol.trajectory.frame_pb2.FrameData.ValuesEntry attribute)
KeyLockableMap (class in narupa.utilities.key_lockable_map)
keys() (narupa.trajectory.frame_data.RecordView method)
kinetic_energy (narupa.trajectory.frame_data.FrameData attribute)
L
lammps_hook() (narupa.lammps.LammpsImd.LammpsImd method)
LammpsImd (class in narupa.lammps.LammpsImd)
LammpsUnitConverter (class in narupa.lammps.conversions)
latest_frame (narupa.app.client.NarupaImdClient attribute)
latest_multiplayer_values (narupa.app.client.NarupaImdClient attribute)
list_value_to_list() (in module narupa.utilities.protobuf_utilities)
LoadTrajectory() (narupa.protocol.instance.instance_service_pb2_grpc.InstanceService static method)
(narupa.protocol.instance.instance_service_pb2_grpc.InstanceServiceServicer method)
LoadTrajectoryRequest (class in narupa.protocol.instance.instance_service_pb2)
LoadTrajectoryResponse (class in narupa.protocol.instance.instance_service_pb2)
lock_content() (narupa.state.state_dictionary.StateDictionary method)
lock_key() (narupa.utilities.key_lockable_map.KeyLockableMap method)
lock_keys (narupa.protocol.state.state_service_pb2.UpdateLocksRequest attribute)
lock_state() (narupa.core.narupa_client.NarupaClient method)
(narupa.core.narupa_server.NarupaServer method)
(narupa.state.state_service.StateService method)
locks_update_to_acquire_release() (in module narupa.state.state_service)
log_addresses() (narupa.essd.server.DiscoveryServer method)
LoggingParams (class in narupa.ase.openmm.runner)
M
main() (in module narupa.ase.openmm.cli)
(in module narupa.essd.list_cli)
(in module narupa.openmm.cli)
make_quiet() (narupa.openmm.runner.OpenMMRunner method)
make_verbose() (narupa.openmm.runner.OpenMMRunner method)
mass_weighted (narupa.imd.particle_interaction.ParticleInteraction attribute)
MASS_WEIGHTED_KEY (narupa.imd.particle_interaction.ParticleInteraction attribute)
max_force (narupa.imd.particle_interaction.ParticleInteraction attribute)
MAX_FORCE_KEY (narupa.imd.particle_interaction.ParticleInteraction attribute)
mdanalysis_to_frame_data() (in module narupa.mdanalysis.converter)
message (narupa.essd.servicehub.ServiceHub attribute)
MissingDataError
MockLammps (class in narupa.lammps.mock)
modify() (narupa.app.selection.RenderingSelection method)
N
name (narupa.app.app_server.NarupaApplicationServer attribute)
(narupa.app.runner.NarupaRunner attribute)
(narupa.command.command_info.CommandInfo attribute)
(narupa.essd.servicehub.ServiceHub attribute)
(narupa.protocol.command.command_service_pb2.CommandMessage attribute)
narupa.app (module)
narupa.app.app_server (module)
narupa.app.client (module)
narupa.app.frame_app (module)
narupa.app.imd_app (module)
narupa.app.multiuser (module)
narupa.app.runner (module)
narupa.app.selection (module)
narupa.ase (module)
narupa.ase.converter (module)
narupa.ase.frame_adaptor (module)
narupa.ase.imd (module)
narupa.ase.imd_calculator (module)
narupa.ase.null_calculator (module)
narupa.ase.openmm (module)
narupa.ase.openmm.calculator (module)
narupa.ase.openmm.cli (module)
narupa.ase.openmm.runner (module)
narupa.ase.trajectory_logger (module)
narupa.ase.wall_constraint (module)
narupa.command (module)
narupa.command.command_info (module)
narupa.command.command_service (module)
narupa.core (module)
narupa.core.grpc_client (module)
narupa.core.grpc_server (module)
narupa.core.narupa_client (module)
narupa.core.narupa_server (module)
narupa.essd (module)
narupa.essd.client (module)
narupa.essd.list_cli (module)
narupa.essd.server (module)
narupa.essd.servicehub (module)
narupa.essd.utils (module)
narupa.imd (module)
narupa.imd.imd_client (module)
narupa.imd.imd_force (module)
narupa.imd.imd_server (module)
narupa.imd.imd_state (module)
narupa.imd.particle_interaction (module)
narupa.lammps (module)
narupa.lammps.conversions (module)
narupa.lammps.LammpsImd (module)
narupa.lammps.mock (module)
narupa.mdanalysis (module)
narupa.mdanalysis.converter (module)
narupa.openmm (module)
narupa.openmm.cli (module)
narupa.openmm.converter (module)
narupa.openmm.imd (module)
narupa.openmm.narupareporter (module)
narupa.openmm.runner (module)
narupa.openmm.serializer (module)
narupa.protocol.address_pb2 (module)
narupa.protocol.address_pb2_grpc (module)
narupa.protocol.array_pb2 (module)
narupa.protocol.array_pb2_grpc (module)
narupa.protocol.command (module)
narupa.protocol.command.command_service_pb2 (module)
narupa.protocol.command.command_service_pb2_grpc (module)
narupa.protocol.instance (module)
narupa.protocol.instance.connect_to_trajectory_pb2 (module)
narupa.protocol.instance.connect_to_trajectory_pb2_grpc (module)
narupa.protocol.instance.instance_service_pb2 (module)
narupa.protocol.instance.instance_service_pb2_grpc (module)
narupa.protocol.instance.representation_service_pb2 (module)
narupa.protocol.instance.representation_service_pb2_grpc (module)
narupa.protocol.state (module)
narupa.protocol.state.state_service_pb2 (module)
narupa.protocol.state.state_service_pb2_grpc (module)
narupa.protocol.trajectory (module)
narupa.protocol.trajectory.frame_pb2 (module)
narupa.protocol.trajectory.frame_pb2_grpc (module)
narupa.protocol.trajectory.get_frame_pb2 (module)
narupa.protocol.trajectory.get_frame_pb2_grpc (module)
narupa.protocol.trajectory.trajectory_service_pb2 (module)
narupa.protocol.trajectory.trajectory_service_pb2_grpc (module)
narupa.state.state_dictionary (module)
narupa.state.state_service (module)
narupa.trajectory (module)
narupa.trajectory.frame_client (module)
narupa.trajectory.frame_data (module)
narupa.trajectory.frame_publisher (module)
narupa.trajectory.frame_server (module)
narupa.utilities (module)
narupa.utilities.change_buffers (module)
narupa.utilities.event (module)
narupa.utilities.grpc_utilities (module)
narupa.utilities.key_lockable_map (module)
narupa.utilities.protobuf_utilities (module)
narupa.utilities.request_queues (module)
narupa.utilities.timing (module)
NarupaApplicationServer (class in narupa.app.app_server)
NarupaASEDynamics (class in narupa.ase.imd)
NarupaClient (class in narupa.core.narupa_client)
NarupaFrameApplication (class in narupa.app.frame_app)
NarupaImdApplication (class in narupa.app.imd_app)
NarupaImdClient (class in narupa.app.client)
NarupaImdReporter (class in narupa.openmm.imd)
NarupaReporter (class in narupa.openmm.narupareporter)
NarupaRunner (class in narupa.app.runner)
NarupaServer (class in narupa.core.narupa_server)
NarupaStubClient (class in narupa.core.narupa_client)
need_frames() (in module narupa.app.client)
need_imd() (in module narupa.app.client)
need_multiplayer() (in module narupa.app.client)
need_to_collect_topology (narupa.lammps.LammpsImd.LammpsImd attribute)
need_trajectory_joined() (in module narupa.app.client)
nullable_int() (in module narupa.mdanalysis.converter)
NullCalculator (class in narupa.ase.null_calculator)
O
object_to_value() (in module narupa.utilities.protobuf_utilities)
ObjectFrozenError
one_queue() (narupa.utilities.request_queues.DictOfQueues method)
openmm_ase_frame_adaptor() (in module narupa.ase.openmm.runner)
openmm_to_frame_data() (in module narupa.openmm.converter)
OpenMMCalculator (class in narupa.ase.openmm.calculator)
OpenMMIMDRunner (class in narupa.ase.openmm.runner)
OpenMMRunner (class in narupa.openmm.runner)
P
particle_count (narupa.trajectory.frame_data.FrameData attribute)
particle_elements (narupa.trajectory.frame_data.FrameData attribute)
particle_names (narupa.trajectory.frame_data.FrameData attribute)
particle_positions (narupa.trajectory.frame_data.FrameData attribute)
particle_residues (narupa.trajectory.frame_data.FrameData attribute)
particle_types (narupa.trajectory.frame_data.FrameData attribute)
ParticleInteraction (class in narupa.imd.particle_interaction)
particles (narupa.imd.particle_interaction.ParticleInteraction attribute)
path (narupa.protocol.instance.instance_service_pb2.LoadTrajectoryRequest attribute)
pause() (narupa.app.runner.NarupaRunner method)
(narupa.ase.imd.NarupaASEDynamics method)
(narupa.ase.openmm.runner.ASEOpenMMRunner method)
(narupa.openmm.runner.OpenMMRunner method)
play() (narupa.app.runner.NarupaRunner method)
(narupa.ase.imd.NarupaASEDynamics method)
(narupa.ase.openmm.runner.ASEOpenMMRunner method)
(narupa.openmm.runner.OpenMMRunner method)
player_can_lock_key() (narupa.utilities.key_lockable_map.KeyLockableMap method)
populate_imd_force() (in module narupa.openmm.imd)
port (narupa.app.app_server.NarupaApplicationServer attribute)
(narupa.app.runner.NarupaRunner attribute)
(narupa.ase.imd.NarupaASEDynamics attribute)
(narupa.core.grpc_server.GrpcServer attribute)
(narupa.essd.client.DiscoveryClient attribute)
(narupa.protocol.address_pb2.Address attribute)
position (narupa.imd.particle_interaction.ParticleInteraction attribute)
positions (narupa.lammps.conversions.LammpsUnitConverter attribute)
potential_energy (narupa.trajectory.frame_data.FrameData attribute)
print_hub() (in module narupa.essd.list_cli)
properties (narupa.imd.particle_interaction.ParticleInteraction attribute)
put() (narupa.utilities.request_queues.GetFrameResponseAggregatingQueue method)
(narupa.utilities.request_queues.SingleItemQueue method)
Q
qualified_server_name() (in module narupa.app.app_server)
R
raw (narupa.trajectory.frame_data.FrameData attribute)
read_from_dictionary() (narupa.app.selection.RenderingSelection method)
read_hide_from_dictionary() (narupa.app.selection.RenderingSelection method)
read_interaction_method_from_dictionary() (narupa.app.selection.RenderingSelection method)
read_renderer_from_dictionary() (narupa.app.selection.RenderingSelection method)
read_selected_particles_from_dictionary() (narupa.app.selection.RenderingSelection method)
read_velocity_reset_from_dictionary() (narupa.app.selection.RenderingSelection method)
record_name (narupa.trajectory.frame_data.ArraysView attribute)
(narupa.trajectory.frame_data.RecordView attribute)
(narupa.trajectory.frame_data.ValuesView attribute)
RecordView (class in narupa.trajectory.frame_data)
register_command() (narupa.command.command_service.CommandService method)
(narupa.core.narupa_server.NarupaServer method)
register_service() (narupa.essd.server.DiscoveryServer method)
release_key() (narupa.utilities.key_lockable_map.KeyLockableMap method)
remove() (narupa.app.selection.RenderingSelection method)
remove_callback() (narupa.utilities.event.Event method)
remove_interaction() (narupa.imd.imd_state.ImdStateWrapper method)
remove_owner() (narupa.utilities.key_lockable_map.KeyLockableMap method)
remove_selection() (narupa.app.client.NarupaImdClient method)
remove_shared_value() (narupa.app.client.NarupaImdClient method)
remove_view() (narupa.utilities.change_buffers.DictionaryChangeMultiView method)
removed (narupa.app.selection.RenderingSelection attribute)
renderer (narupa.app.selection.RenderingSelection attribute)
RenderingSelection (class in narupa.app.selection)
report() (narupa.openmm.imd.NarupaImdReporter method)
(narupa.openmm.narupareporter.NarupaReporter method)
representation (narupa.protocol.instance.representation_service_pb2.SetRepresentationRequest attribute)
RepresentationService (class in narupa.protocol.instance.representation_service_pb2_grpc)
RepresentationServiceServicer (class in narupa.protocol.instance.representation_service_pb2_grpc)
RepresentationServiceStub (class in narupa.protocol.instance.representation_service_pb2_grpc)
required (narupa.mdanalysis.converter.FrameDataField attribute)
reset() (narupa.app.runner.NarupaRunner method)
(narupa.ase.imd.NarupaASEDynamics method)
(narupa.ase.openmm.runner.ASEOpenMMRunner method)
(narupa.ase.trajectory_logger.TrajectoryLogger method)
(narupa.openmm.runner.OpenMMRunner method)
reset_temperature (narupa.ase.imd_calculator.ImdCalculator attribute)
reset_velocities (narupa.imd.particle_interaction.ParticleInteraction attribute)
RESET_VELOCITIES_KEY (narupa.imd.particle_interaction.ParticleInteraction attribute)
residue_chains (narupa.trajectory.frame_data.FrameData attribute)
residue_count (narupa.trajectory.frame_data.FrameData attribute)
residue_ids (narupa.trajectory.frame_data.FrameData attribute)
residue_names (narupa.trajectory.frame_data.FrameData attribute)
resolve_host_broadcast_address() (in module narupa.essd.utils)
ResourceLockedError
result (narupa.protocol.command.command_service_pb2.CommandReply attribute)
root_selection (narupa.app.client.NarupaImdClient attribute)
RpcAlreadyTerminatedError
run() (narupa.app.runner.NarupaRunner method)
(narupa.ase.imd.NarupaASEDynamics method)
(narupa.ase.openmm.runner.ASEOpenMMRunner method)
(narupa.openmm.runner.OpenMMRunner method)
run_command() (narupa.app.client.NarupaImdClient method)
(narupa.core.narupa_client.NarupaClient method)
run_imd_command() (narupa.app.client.NarupaImdClient method)
run_multiplayer_command() (narupa.app.client.NarupaImdClient method)
run_pause() (narupa.app.client.NarupaImdClient method)
run_play() (narupa.app.client.NarupaImdClient method)
run_reset() (narupa.app.client.NarupaImdClient method)
run_step() (narupa.app.client.NarupaImdClient method)
run_trajectory_command() (narupa.app.client.NarupaImdClient method)
RunCommand() (narupa.command.command_service.CommandService method)
(narupa.protocol.command.command_service_pb2_grpc.Command static method)
(narupa.protocol.command.command_service_pb2_grpc.CommandServicer method)
running_discovery (narupa.app.app_server.NarupaApplicationServer attribute)
(narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
S
scale (narupa.imd.particle_interaction.ParticleInteraction attribute)
SCALE_KEY (narupa.imd.particle_interaction.ParticleInteraction attribute)
scatter_atoms() (narupa.lammps.mock.MockLammps method)
search_for_services() (narupa.essd.client.DiscoveryClient method)
selected_particle_ids (narupa.app.selection.RenderingSelection attribute)
selection_id (narupa.app.selection.RenderingSelection attribute)
(narupa.protocol.instance.representation_service_pb2.SetRepresentationRequest attribute)
selection_name (narupa.app.selection.RenderingSelection attribute)
selections (narupa.app.client.NarupaImdClient attribute)
send_ase_frame() (in module narupa.ase.frame_adaptor)
send_frame() (narupa.trajectory.frame_publisher.FramePublisher method)
(narupa.trajectory.frame_server.FrameServer method)
serialize_simulation() (in module narupa.openmm.serializer)
server (narupa.app.app_server.NarupaApplicationServer attribute)
server_timestamp (narupa.trajectory.frame_data.FrameData attribute)
ServiceHub (class in narupa.essd.servicehub)
services (narupa.essd.servicehub.ServiceHub attribute)
set() (narupa.trajectory.frame_data.ArraysView method)
(narupa.trajectory.frame_data.RecordView method)
(narupa.trajectory.frame_data.ValuesView method)
(narupa.utilities.key_lockable_map.KeyLockableMap method)
set_float_array() (narupa.trajectory.frame_data.FrameData method)
set_index_array() (narupa.trajectory.frame_data.FrameData method)
set_no_replace() (narupa.utilities.key_lockable_map.KeyLockableMap method)
set_particles() (narupa.app.selection.RenderingSelection method)
set_periodic_bounds() (narupa.ase.openmm.calculator.OpenMMCalculator static method)
set_shared_value() (narupa.app.client.NarupaImdClient method)
set_string_array() (narupa.trajectory.frame_data.FrameData method)
SetRepresentation() (narupa.protocol.instance.representation_service_pb2_grpc.RepresentationService static method)
(narupa.protocol.instance.representation_service_pb2_grpc.RepresentationServiceServicer method)
SetRepresentationRequest (class in narupa.protocol.instance.representation_service_pb2)
SetRepresentationResponse (class in narupa.protocol.instance.representation_service_pb2)
setup_services() (narupa.core.grpc_server.GrpcServer method)
(narupa.core.narupa_server.NarupaServer method)
(narupa.trajectory.frame_server.FrameServer method)
shortcuts (narupa.trajectory.frame_data.FrameData attribute)
SingleItemQueue (class in narupa.utilities.request_queues)
singular (narupa.trajectory.frame_data.ArraysView attribute)
(narupa.trajectory.frame_data.RecordView attribute)
(narupa.trajectory.frame_data.ValuesView attribute)
start() (narupa.essd.server.DiscoveryServer method)
start_default_server_and_discovery() (in module narupa.app.app_server)
start_interaction() (narupa.app.client.NarupaImdClient method)
(narupa.imd.imd_client.ImdClient method)
State (class in narupa.protocol.state.state_service_pb2_grpc)
state_update_to_dictionary_change() (in module narupa.state.state_service)
StateDictionary (class in narupa.state.state_dictionary)
StateService (class in narupa.state.state_service)
StateServicer (class in narupa.protocol.state.state_service_pb2_grpc)
StateStub (class in narupa.protocol.state.state_service_pb2_grpc)
StateUpdate (class in narupa.protocol.state.state_service_pb2)
step() (narupa.app.runner.NarupaRunner method)
(narupa.ase.imd.NarupaASEDynamics method)
(narupa.ase.openmm.runner.ASEOpenMMRunner method)
(narupa.openmm.runner.OpenMMRunner method)
stop_all_interactions() (narupa.imd.imd_client.ImdClient method)
stop_interaction() (narupa.app.client.NarupaImdClient method)
(narupa.imd.imd_client.ImdClient method)
string_values (narupa.protocol.array_pb2.ValueArray attribute)
StringArray (class in narupa.protocol.array_pb2)
struct_to_dict() (in module narupa.utilities.protobuf_utilities)
subscribe_all_state_updates() (narupa.core.narupa_client.NarupaClient method)
subscribe_changes() (narupa.utilities.change_buffers.DictionaryChangeBuffer method)
(narupa.utilities.change_buffers.DictionaryChangeMultiView method)
subscribe_channel_connectivity_change() (in module narupa.utilities.grpc_utilities)
subscribe_frames_async() (narupa.trajectory.frame_client.FrameClient method)
subscribe_frames_blocking() (narupa.trajectory.frame_client.FrameClient method)
subscribe_frames_iterate() (narupa.trajectory.frame_client.FrameClient method)
subscribe_last_frames_async() (narupa.trajectory.frame_client.FrameClient method)
subscribe_last_frames_blocking() (narupa.trajectory.frame_client.FrameClient method)
subscribe_multiplayer() (narupa.app.client.NarupaImdClient method)
subscribe_rpc_termination() (in module narupa.utilities.grpc_utilities)
subscribe_to_all_frames() (narupa.app.client.NarupaImdClient method)
subscribe_to_frames() (narupa.app.client.NarupaImdClient method)
SubscribeFrames() (narupa.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryService static method)
(narupa.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryServiceServicer method)
(narupa.trajectory.frame_publisher.FramePublisher method)
SubscribeLatestFrames() (narupa.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryService static method)
(narupa.protocol.trajectory.trajectory_service_pb2_grpc.TrajectoryServiceServicer method)
(narupa.trajectory.frame_publisher.FramePublisher method)
SubscribeStateUpdates() (narupa.protocol.state.state_service_pb2_grpc.State static method)
(narupa.protocol.state.state_service_pb2_grpc.StateServicer method)
(narupa.state.state_service.StateService method)
SubscribeStateUpdatesRequest (class in narupa.protocol.state.state_service_pb2)
success (narupa.protocol.state.state_service_pb2.UpdateLocksResponse attribute)
(narupa.protocol.state.state_service_pb2.UpdateStateResponse attribute)
SupportsClose (class in narupa.app.app_server)
T
temperature (narupa.ase.imd_calculator.ImdCalculator attribute)
time_step (narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
timestamping (narupa.ase.trajectory_logger.TrajectoryLogger attribute)
to_dictionary() (narupa.app.selection.RenderingSelection method)
to_message() (narupa.essd.servicehub.ServiceHub method)
topology (narupa.ase.openmm.calculator.OpenMMCalculator attribute)
trajectory_path (narupa.ase.openmm.runner.TrajectoryLoggerInfo attribute)
TrajectoryLogger (class in narupa.ase.trajectory_logger)
TrajectoryLoggerInfo (class in narupa.ase.openmm.runner)
TrajectoryService (class in narupa.protocol.trajectory.trajectory_service_pb2_grpc)
TrajectoryServiceServicer (class in narupa.protocol.trajectory.trajectory_service_pb2_grpc)
TrajectoryServiceStub (class in narupa.protocol.trajectory.trajectory_service_pb2_grpc)
type (narupa.lammps.conversions.LammpsUnitConverter attribute)
TYPE_KEY (narupa.imd.particle_interaction.ParticleInteraction attribute)
U
unregister_command() (narupa.command.command_service.CommandService method)
(narupa.core.narupa_server.NarupaServer method)
unregister_service() (narupa.essd.server.DiscoveryServer method)
UnsupportedFormatError
update (narupa.protocol.state.state_service_pb2.UpdateStateRequest attribute)
update() (narupa.utilities.change_buffers.DictionaryChangeBuffer method)
(narupa.utilities.change_buffers.DictionaryChangeMultiView method)
update_available_commands() (narupa.app.client.NarupaImdClient method)
(narupa.core.narupa_client.NarupaClient method)
update_interaction() (narupa.app.client.NarupaImdClient method)
(narupa.imd.imd_client.ImdClient method)
update_interval (narupa.protocol.state.state_service_pb2.SubscribeStateUpdatesRequest attribute)
update_locks() (narupa.core.narupa_server.NarupaServer method)
(narupa.state.state_dictionary.StateDictionary method)
(narupa.state.state_service.StateService method)
update_selection() (narupa.app.client.NarupaImdClient method)
update_state() (narupa.core.narupa_server.NarupaServer method)
(narupa.state.state_dictionary.StateDictionary method)
(narupa.state.state_service.StateService method)
updated (narupa.app.selection.RenderingSelection attribute)
UpdateLocks() (narupa.protocol.state.state_service_pb2_grpc.State static method)
(narupa.protocol.state.state_service_pb2_grpc.StateServicer method)
(narupa.state.state_service.StateService method)
UpdateLocksRequest (class in narupa.protocol.state.state_service_pb2)
UpdateLocksResponse (class in narupa.protocol.state.state_service_pb2)
UpdateState() (narupa.protocol.state.state_service_pb2_grpc.State static method)
(narupa.protocol.state.state_service_pb2_grpc.StateServicer method)
(narupa.state.state_service.StateService method)
UpdateStateRequest (class in narupa.protocol.state.state_service_pb2)
UpdateStateResponse (class in narupa.protocol.state.state_service_pb2)
used_shortcuts (narupa.trajectory.frame_data.FrameData attribute)
V
validate_ase_can_append_filename() (in module narupa.ase.trajectory_logger)
validate_ase_can_append_format() (in module narupa.ase.trajectory_logger)
validate_dict_is_serializable() (in module narupa.state.state_service)
value (narupa.protocol.trajectory.frame_pb2.FrameData.ArraysEntry attribute)
(narupa.protocol.trajectory.frame_pb2.FrameData.ValuesEntry attribute)
value_keys (narupa.trajectory.frame_data.FrameData attribute)
value_to_object() (in module narupa.utilities.protobuf_utilities)
ValueArray (class in narupa.protocol.array_pb2)
values (narupa.protocol.array_pb2.FloatArray attribute)
(narupa.protocol.array_pb2.IndexArray attribute)
(narupa.protocol.array_pb2.StringArray attribute)
(narupa.protocol.trajectory.frame_pb2.FrameData attribute)
ValuesView (class in narupa.trajectory.frame_data)
VariableIntervalGenerator (class in narupa.utilities.timing)
velocity_reset (narupa.app.selection.RenderingSelection attribute)
velocity_reset_available (narupa.imd.imd_state.ImdStateWrapper attribute)
VelocityWallConstraint (class in narupa.ase.wall_constraint)
verbose (narupa.ase.openmm.runner.ASEOpenMMRunner attribute)
(narupa.openmm.runner.OpenMMRunner attribute)
verbosity_interval (narupa.openmm.runner.OpenMMRunner attribute)
version (narupa.essd.servicehub.ServiceHub attribute)
W
wait_until_first_frame() (narupa.app.client.NarupaImdClient method)
wrap_pbc() (in module narupa.imd.imd_force)
write() (narupa.ase.trajectory_logger.TrajectoryLogger method)
write_interval (narupa.ase.openmm.runner.TrajectoryLoggerInfo attribute)
Y
yield_interval() (in module narupa.utilities.timing)
(narupa.utilities.timing.VariableIntervalGenerator method)
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